chr1:15524988:G>A Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:15,851,483-15,851,483 View the variant detail on this assembly version. |
| hg38 | chr1:15,524,988-15,524,988 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.126 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.002 | Carcinoma of lung | Meta-analysis results showed positive associations between heterozygote (A/G) of... | BeFree | 23315881 | Detail |
| 0.014 | Malignant neoplasm of lung | Meta-analysis results showed positive associations between heterozygote (A/G) of... | BeFree | 23315881 | Detail |
| <0.001 | Carcinoma of lung | In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs46459... | BeFree | 20661084 | Detail |
| <0.001 | Non-small cell lung carcinoma | The CASP7 rs2227310 and CASP9 rs4645981 polymorphisms may affect survival in ear... | BeFree | 19826114 | Detail |
| 0.002 | Carcinoma of lung | In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs46459... | BeFree | 20661084 | Detail |
| 0.002 | Non-small cell lung carcinoma | The CASP7 rs2227310 and CASP9 rs4645981 polymorphisms may affect survival in ear... | BeFree | 19826114 | Detail |
| 0.008 | Malignant neoplasm of lung | In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs46459... | BeFree | 20661084 | Detail |
| 0.014 | Malignant neoplasm of lung | In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs46459... | BeFree | 20661084 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Meta-analysis results showed positive associations between heterozygote (A/G) of rs507879 in the CAS... | DisGeNET | Detail |
| Meta-analysis results showed positive associations between heterozygote (A/G) of rs507879 in the CAS... | DisGeNET | Detail |
| In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs4645981C>T were associ... | DisGeNET | Detail |
| The CASP7 rs2227310 and CASP9 rs4645981 polymorphisms may affect survival in early-stage NSCLC. | DisGeNET | Detail |
| In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs4645981C>T were associ... | DisGeNET | Detail |
| The CASP7 rs2227310 and CASP9 rs4645981 polymorphisms may affect survival in early-stage NSCLC. | DisGeNET | Detail |
| In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs4645981C>T were associ... | DisGeNET | Detail |
| In individual polymorphism analysis, the CASP7 rs2227310C>G and CASP9 rs4645981C>T were associ... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs4645981 dbSNP
- Genome
- hg38
- Position
- chr1:15,524,988-15,524,988
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs4645981
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1256
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2009
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 15994
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